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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_15443895_15445043_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15443895 - 15445043
Intron Length:
1149

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGCCTC
5'SS Class:
major
3'SS Sequence:
TTTTCCTGTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TTTTCCTGTACA
Flanking Amino Acid:
RLKKTWASVPKDRMLMFEEL
Intron Amino Acid Position:
499

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
69.9
41.1
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
84.7
0.78
0.8
80.2
31.9
Minor 5ss
44.1
-0.6
3.1
60.3
38.4
Minor BPS
70.6
0.64
1.8
84.66
34.6

Associated Gene:

Gene:
RGL1
Ensembl Gene ID:
ENSAPLG00000015888
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016611
15429174 - 15503718
74545