About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_15445148_15449442_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15445148 - 15449442
Intron Length:
4295

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAAGCAT
5'SS Class:
major
3'SS Sequence:
ACTCCTTTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TGCTCCTGTACT
Flanking Amino Acid:
IIEKWIHIAHECRILKNFSS
Intron Amino Acid Position:
465

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.6
0.32
1.3
62.9
43.2
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
77.8
0.62
0.8
71.8
32
Minor 5ss
33.2
-1.9
3.5
46.1
42.9
Minor BPS
60.6
0.41
1.9
78
43.8

Associated Gene:

Gene:
RGL1
Ensembl Gene ID:
ENSAPLG00000015888
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016611
15429174 - 15503718
74545