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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_15449659_15450287_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15449659 - 15450287
Intron Length:
629

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTATGTAGA
5'SS Class:
major
3'SS Sequence:
TATTTCACTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAC
U12 Branch Point Sequence:
CTCTATTTCACT
Flanking Amino Acid:
VAEQLTYMDAKLFKKVVPHH
Intron Amino Acid Position:
393

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.7
0.44
1.1
64.7
41.1
Major BPS
81.3
0.78
0.8
83.4
26.1
Major PPT
76.2
0.59
0.8
68.1
38.4
Minor 5ss
43.4
-0.7
2.5
56
42.4
Minor BPS
52.3
0.15
2
72
45.3

Associated Gene:

Gene:
RGL1
Ensembl Gene ID:
ENSAPLG00000015888
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016611
15429174 - 15503718
74545