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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_15450413_15453420_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15450413 - 15453420
Intron Length:
3008

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTAAGCTTC
5'SS Class:
major
3'SS Sequence:
CCATCCTGAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
ATTTACTAAACC
Flanking Amino Acid:
QFQKQEVENDNGIHSTSPCN
Intron Amino Acid Position:
351

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1
68.7
37.3
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
62.3
0.28
1
57.5
37.1
Minor 5ss
51
0.04
2.7
69.6
36
Minor BPS
65.2
0.46
1.8
77.96
37.5

Associated Gene:

Gene:
RGL1
Ensembl Gene ID:
ENSAPLG00000015888
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016611
15429174 - 15503718
74545