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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_15463320_15474844_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15463320 - 15474844
Intron Length:
11525

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
GTCATTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTCAT
U12 Branch Point Sequence:
TTCCTCTAAACA
Flanking Amino Acid:
TKEVLELLLDRYGNLETLSC
Intron Amino Acid Position:
263

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
76
31.7
Major BPS
76
0.65
1.1
77.4
37.3
Major PPT
83
0.74
0.9
80.3
37.1
Minor 5ss
31.7
-2.1
3.3
42.5
44.5
Minor BPS
61.9
0.37
1.7
72.02
40.3

Associated Gene:

Gene:
RGL1
Ensembl Gene ID:
ENSAPLG00000015888
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016611
15429174 - 15503718
74545