About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_15538480_15542815_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15538480 - 15542815
Intron Length:
4336

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
CAATATTTAAAA
Flanking Amino Acid:
VKARYELYVKGENPFEINDQ
Intron Amino Acid Position:
513

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
81.6
33.2
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
89.3
0.88
0.6
81.8
30.2
Minor 5ss
39.7
-1.2
3.1
56.6
47.5
Minor BPS
52.9
0.09
1.6
59.79
39.5

Associated Gene:

Gene:
ZNF326
Ensembl Gene ID:
ENSAPLG00000015720
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016398
15538315 - 15562197
23883