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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_15545331_15546130_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15545331 - 15546130
Intron Length:
800

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGACAA
5'SS Class:
major
3'SS Sequence:
TGATTCTCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTTTTCTGATTC
Flanking Amino Acid:
FDKVVMEFLHECMVNKFKKT
Intron Amino Acid Position:
404

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
69.9
36.1
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
74.8
0.56
0.9
66.9
40.3
Minor 5ss
33.7
-1.9
3.2
43.9
43.6
Minor BPS
60.8
0.32
1.7
74.67
36.2

Associated Gene:

Gene:
ZNF326
Ensembl Gene ID:
ENSAPLG00000015720
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016398
15538315 - 15562197
23883