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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_15546279_15547699_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15546279 - 15547699
Intron Length:
1421

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTGTT
5'SS Class:
major
3'SS Sequence:
TTTCTCTTGCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTAATTGTAATA
Flanking Amino Acid:
KNSEKYGDGYRMAFTCSFCK
Intron Amino Acid Position:
354

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.1
79.1
34.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
77.9
0.63
0.9
73.6
37
Minor 5ss
41.1
-1
3.1
58.6
46
Minor BPS
49.1
-0
2
63.9
37

Associated Gene:

Gene:
ZNF326
Ensembl Gene ID:
ENSAPLG00000015720
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016398
15538315 - 15562197
23883