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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_15554405_15556454_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15554405 - 15556454
Intron Length:
2050

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATAA
5'SS Class:
strong_major
3'SS Sequence:
GCAACTTTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
TTTCTCCTCACT
Flanking Amino Acid:
GGGGGGGGGNRFGPYESYDS
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
76.3
28.1
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
71.4
0.48
1
61.3
44.2
Minor 5ss
36.6
-1.5
3.1
46.9
48.4
Minor BPS
54.7
0.23
2.1
81.84
39.4

Associated Gene:

Gene:
ZNF326
Ensembl Gene ID:
ENSAPLG00000015720
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016398
15538315 - 15562197
23883