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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_15556582_15561592_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15556582 - 15561592
Intron Length:
5011

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAGCT
5'SS Class:
strong_major
3'SS Sequence:
TGCTCTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TCTTTATAAACA
Flanking Amino Acid:
GVNMPSGSVSDMDRDYGHGG
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
74.3
34.2
Major BPS
78.6
0.71
1
78.6
31
Major PPT
82
0.72
0.8
80.7
31.3
Minor 5ss
39.2
-1.2
3.4
56.9
47.4
Minor BPS
56.7
0.21
1.9
71.68
40.7

Associated Gene:

Gene:
ZNF326
Ensembl Gene ID:
ENSAPLG00000015720
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016398
15538315 - 15562197
23883