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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_15561668_15562181_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15561668 - 15562181
Intron Length:
514

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCGCC
5'SS Class:
strong_major
3'SS Sequence:
CCATCCTCTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TTCTCACTGACC
Flanking Amino Acid:
MDYGEAEDRDWRFPD
Intron Amino Acid Position:
6

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
69.3
35.8
Major BPS
85
0.87
0.8
85.6
23
Major PPT
74.8
0.56
0.8
65.5
35.9
Minor 5ss
32.2
-2
3.3
41.8
45.1
Minor BPS
54.6
0.13
2
72.1
39

Associated Gene:

Gene:
ZNF326
Ensembl Gene ID:
ENSAPLG00000015720
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016398
15538315 - 15562197
23883