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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_1564665_1598513_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1564665 - 1598513
Intron Length:
33849

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTACC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
CTTTCTTTCATT
Flanking Amino Acid:
WWQVTSGSIQDSGECVAELR
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.87
0.9
78.8
35.5
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
83.5
0.75
0.7
82.2
28.1
Minor 5ss
35.6
-1.6
2.9
46
42.3
Minor BPS
67.1
0.62
1.7
82.98
39.3

Associated Gene:

Gene:
SLC44A3
Ensembl Gene ID:
ENSAPLG00000010624
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046210
1563697 - 1638489
74793