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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_15727032_15727851_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
15727032 - 15727851
Intron Length:
820

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
ACTTATTATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
ATATACTTATTA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
81.6
33.2
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
75.7
0.58
1
69.4
40
Minor 5ss
55.3
0.18
2.7
73.8
36.4
Minor BPS
56.7
0.21
1.8
67.87
38.4

Associated Gene:

Gene:
KYAT3
Ensembl Gene ID:
ENSAPLG00000015343
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016017
15726987 - 15744510
17524