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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_15727953_15731154_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15727953 - 15731154
Intron Length:
3202

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTCGATCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TATATCTCGATC
Flanking Amino Acid:
SRSIKLSASDTMAFRHKNTR
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
92.9
22.2
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
75.9
0.58
0.9
68.8
36.8
Minor 5ss
44.1
-0.6
2.9
65.1
39.1
Minor BPS
51.6
0.03
1.6
63.06
36.5

Associated Gene:

Gene:
KYAT3
Ensembl Gene ID:
ENSAPLG00000015343
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016017
15726987 - 15744510
17524