About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_15730013_15731154_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15730013 - 15731154
Intron Length:
1142

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
CTCGATCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TATATCTCGATC
Flanking Amino Acid:
SELNLYRRRTTMAFRHKNTR
Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
72.1
39.4
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
75.9
0.58
0.9
68.8
36.8
Minor 5ss
37.3
-1.4
2.7
48
41.7
Minor BPS
51.6
0.03
1.6
63.06
36.5

Associated Gene:

Gene:
KYAT3
Ensembl Gene ID:
ENSAPLG00000015343
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044692
15729926 - 15744510
14585