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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_15749108_15751090_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15749108 - 15751090
Intron Length:
1983

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGCGCC
5'SS Class:
major
3'SS Sequence:
TTTTTTTTCTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TAAGAATTAATT
Flanking Amino Acid:
MASTSRLDVLPRVTC
Intron Amino Acid Position:
6

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
60.6
38.8
Major BPS
83
0.82
0.8
82
24.9
Major PPT
91.3
0.93
0.5
92.5
17.5
Minor 5ss
32.6
-2
3.3
43.1
44.2
Minor BPS
49.7
0.06
1.9
68.54
41.9

Associated Gene:

Gene:
GTF2B
Ensembl Gene ID:
ENSAPLG00000015107
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015759
15749091 - 15768431
19341