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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_15751198_15759971_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15751198 - 15759971
Intron Length:
8774

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
TCTGTGATCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTAAT
U12 Branch Point Sequence:
AATACATTAATG
Flanking Amino Acid:
MICSECGLVVGDRVIDVGSE
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.7
81.8
38.5
Major BPS
79.4
0.73
0.9
79.6
29.1
Major PPT
73.1
0.52
0.9
69.7
40.3
Minor 5ss
35.1
-1.7
2.7
42.5
44.3
Minor BPS
57.5
0.1
1.7
61.5
40

Associated Gene:

Gene:
GTF2B
Ensembl Gene ID:
ENSAPLG00000015107
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015759
15749091 - 15768431
19341