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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_15766529_15766899_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15766529 - 15766899
Intron Length:
371

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTGTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTTCAT
U12 Branch Point Sequence:
TCAAGCTAAAGT
Flanking Amino Acid:
RQEGVPRTFKEICAVSRISK
Intron Amino Acid Position:
179

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.8
87.9
29.3
Major BPS
76
0.65
1.1
77.4
37.3
Major PPT
84.1
0.77
0.8
84.8
30
Minor 5ss
49.8
-0
2.8
73.2
43.7
Minor BPS
43.7
-0.4
2.3
60.9
48.4

Associated Gene:

Gene:
GTF2B
Ensembl Gene ID:
ENSAPLG00000015107
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015759
15749091 - 15768431
19341