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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_15767182_15768297_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15767182 - 15768297
Intron Length:
1116

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAACTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTGTCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATCAT
U12 Branch Point Sequence:
AAACTGTTAATC
Flanking Amino Acid:
QASAEKRTQKEIGDIAGVAD
Intron Amino Acid Position:
273

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
77.9
36.7
Major BPS
80.4
0.76
1
80.3
31.8
Major PPT
80.8
0.69
0.8
80.5
31.5
Minor 5ss
37.2
-1.4
3.4
56.5
47.6
Minor BPS
47.9
-0.1
2
55.97
36.1

Associated Gene:

Gene:
GTF2B
Ensembl Gene ID:
ENSAPLG00000015107
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015759
15749091 - 15768431
19341