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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_15775034_15775113_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15775034 - 15775113
Intron Length:
80

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
GATTATTTTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
TAAACATCAATT
Flanking Amino Acid:
EDVKKHHFFRLIDWNALLAK
Intron Amino Acid Position:
880

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
1
71.6
40.2
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
79.9
0.67
0.9
72.7
41.8
Minor 5ss
34.1
-1.8
2.8
34.5
41
Minor BPS
49.8
0.07
1.8
69.08
41.1

Associated Gene:

Gene:
PKN2
Ensembl Gene ID:
ENSAPLG00000014769
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015410
15774830 - 15802239
27410