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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_15775195_15776787_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15775195 - 15776787
Intron Length:
1593

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
CGTATTTTGTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TCACACTAAAAT
Flanking Amino Acid:
STEAISIMRRLLRRNPERRL
Intron Amino Acid Position:
853

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
1
76.9
33.7
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
73.4
0.53
1
72.7
42.2
Minor 5ss
32.3
-2
2.9
32.2
42.1
Minor BPS
47.4
-0.1
1.9
64.83
44.8

Associated Gene:

Gene:
PKN2
Ensembl Gene ID:
ENSAPLG00000014769
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015410
15774830 - 15802239
27410