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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_15781769_15781855_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15781769 - 15781855
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATGTC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTGTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
TAAGACTTAAAT
Flanking Amino Acid:
AVLGRGHFGKVLLAEYKNTN
Intron Amino Acid Position:
633

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
82
29.3
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
85.1
0.79
0.8
84.6
30.4
Minor 5ss
36.6
-1.5
3.4
52
45.2
Minor BPS
57.2
0.31
1.7
72.86
43

Associated Gene:

Gene:
PKN2
Ensembl Gene ID:
ENSAPLG00000014769
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015410
15774830 - 15802239
27410