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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_15781932_15782029_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15781932 - 15782029
Intron Length:
98

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAATA
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTATACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTTTTTAACG
Flanking Amino Acid:
YSNVREPEDRRTQQRFQFSL
Intron Amino Acid Position:
607

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
83.2
28.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
85.2
0.79
0.9
80.7
35.9
Minor 5ss
36.4
-1.5
3.1
48.8
46.9
Minor BPS
82
0.87
1.1
82.56
32

Associated Gene:

Gene:
PKN2
Ensembl Gene ID:
ENSAPLG00000014769
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015410
15774830 - 15802239
27410