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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_15782708_15782926_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15782708 - 15782926
Intron Length:
219

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCATA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCTTGCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
VRIPELALPASDSPVAKLDF
Intron Amino Acid Position:
518

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1
78
38.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
79.5
0.66
1
73.9
41.1
Minor 5ss
41.6
-0.9
3.2
56.7
47.6
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
PKN2
Ensembl Gene ID:
ENSAPLG00000014769
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015410
15774830 - 15802239
27410