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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_15783473_15783609_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15783473 - 15783609
Intron Length:
137

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
ATTTGAACTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
ATTATTTGAACT
Flanking Amino Acid:
LEPQGTLFAEVTFFNPVIER
Intron Amino Acid Position:
435

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83.4
27.8
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
72.3
0.5
1
64.5
41
Minor 5ss
33.8
-1.9
2.9
41.4
44.7
Minor BPS
63.9
0.52
1.4
79.7
35.9

Associated Gene:

Gene:
PKN2
Ensembl Gene ID:
ENSAPLG00000014769
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015410
15774830 - 15802239
27410