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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_15783754_15785586_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15783754 - 15785586
Intron Length:
1833

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAAGATG
5'SS Class:
major
3'SS Sequence:
TTTACTGTCATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TAATAAGTAATT
Flanking Amino Acid:
DQKFTLELDRSRELEISVYW
Intron Amino Acid Position:
387

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.1
0.52
1.1
66.7
44.4
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
73.7
0.53
0.9
68.7
37.1
Minor 5ss
34.8
-1.7
3.3
39.8
46
Minor BPS
45.9
-0.2
2.3
68.54
41.9

Associated Gene:

Gene:
PKN2
Ensembl Gene ID:
ENSAPLG00000014769
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015410
15774830 - 15802239
27410