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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_15791143_15794269_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15791143 - 15794269
Intron Length:
3127

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTAATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTTGTTTTAATA
Flanking Amino Acid:
IQMYSNGSSKDRKLLATAQQ
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
82.5
37
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
80
0.68
0.9
77.6
35.5
Minor 5ss
36.7
-1.5
3.5
55.8
48.4
Minor BPS
71.7
0.68
1.3
78
33.3

Associated Gene:

Gene:
PKN2
Ensembl Gene ID:
ENSAPLG00000014769
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015410
15774830 - 15802239
27410