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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_15794422_15802007_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15794422 - 15802007
Intron Length:
7586

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGTAA
5'SS Class:
major
3'SS Sequence:
ATTTAATTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTGCATTTAATT
Flanking Amino Acid:
IVVTDPEDVTDCPRTPDTPN
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.8
0.49
1.1
64.9
37.3
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
76.6
0.6
0.9
69.7
39.8
Minor 5ss
35
-1.7
3.4
46.8
48.5
Minor BPS
64.4
0.53
1.5
78.19
38.4

Associated Gene:

Gene:
PKN2
Ensembl Gene ID:
ENSAPLG00000014769
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015410
15774830 - 15802239
27410