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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_1601910_1603282_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1601910 - 1603282
Intron Length:
1373

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGTGCAAC
5'SS Class:
major
3'SS Sequence:
TCTTATTTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
TTTCTCTTATTT
Flanking Amino Acid:
EDLQSFARNNGSCLCVYNLN
Intron Amino Acid Position:
247

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1
62.8
37.3
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
81.4
0.71
0.7
80.7
30.9
Minor 5ss
40.5
-1.1
2.8
47.8
42.7
Minor BPS
68.2
0.65
1.5
84.89
35.8

Associated Gene:

Gene:
SLC44A3
Ensembl Gene ID:
ENSAPLG00000010624
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011104
1598021 - 1637423
39403
ENSAPLT00000046210
1563697 - 1638489
74793
ENSAPLT00000039721
1597779 - 1638755
40977