Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_16104503_16146402_F

Intron Information:

Intron Rank:

134834

Intron Class:

major

Intron Phase:

Intron Coordinates:

16104503 - 16146402

Intron Length:

41900

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGTGCA

5'SS Class:

strong_major

3'SS Sequence:

CATTCCTTCACAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTCAT

U12 Branch Point Sequence:

ATCTCTTCAAAT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.6

0.84

0.9

35.3

Major BPS

92.2

1.05

0.7

91.9

19.6

Major PPT

78.4

0.64

0.8

72.1

32.1

Minor 5ss

31.6

-2.1

3.3

41.1

45.4

Minor BPS

60.5

0.41

1.6

75.88

40.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000022515

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037097

16104019 - 16146981

42963