About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_1616619_1622536_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1616619 - 1622536
Intron Length:
5918

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GTTTCCAAAACA
Flanking Amino Acid:
AGAVVTCYFNRNKNSPPRHP
Intron Amino Acid Position:
524

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.5
1.1
0.7
87.9
25.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
91.2
0.93
0.6
85.4
29.4
Minor 5ss
35.3
-1.7
3.2
50.4
46
Minor BPS
61.4
0.35
2
77.37
39.2

Associated Gene:

Gene:
SLC44A3
Ensembl Gene ID:
ENSAPLG00000010624
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046210
1563697 - 1638489
74793
ENSAPLT00000039721
1597779 - 1638755
40977
ENSAPLT00000011104
1598021 - 1637423
39403