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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_1622694_1625243_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1622694 - 1625243
Intron Length:
2550

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
CATTTTATTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TGTCCAATAACC
Flanking Amino Acid:
LHLFNILKQKESACAKCLLK
Intron Amino Acid Position:
577

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99
1.15
0.6
96.2
11.9
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
83.2
0.75
0.8
77.7
34.9
Minor 5ss
39.3
-1.2
2.8
50.9
45.5
Minor BPS
55.3
0.15
1.9
71.69
38.3

Associated Gene:

Gene:
SLC44A3
Ensembl Gene ID:
ENSAPLG00000010624
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039721
1597779 - 1638755
40977
ENSAPLT00000011104
1598021 - 1637423
39403
ENSAPLT00000046210
1563697 - 1638489
74793