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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_1625328_1634631_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1625328 - 1634631
Intron Length:
9304

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGCTCT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCATTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TCTTCTCTCATT
Flanking Amino Acid:
QEGCLSYFNQHVYTTTAING
Intron Amino Acid Position:
605

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
72.5
39.7
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
84.1
0.77
0.8
81.5
28.8
Minor 5ss
45.4
-0.5
3.1
65.8
45.3
Minor BPS
52
0.14
2
75.83
41.7

Associated Gene:

Gene:
SLC44A3
Ensembl Gene ID:
ENSAPLG00000010624
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046210
1563697 - 1638489
74793
ENSAPLT00000039721
1597779 - 1638755
40977
ENSAPLT00000011104
1598021 - 1637423
39403