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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_16301617_16303962_F

Intron Information:

Intron Rank:
128233
Intron Class:
major
Intron Phase:
Intron Coordinates:
16301617 - 16303962
Intron Length:
2346

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTGATACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TCTCTTTTGATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.7
33.7
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
81
0.7
0.9
76.3
36.9
Minor 5ss
32.8
-2
2.9
39.4
46.1
Minor BPS
60.6
0.33
1.2
66.37
34.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019062
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033517
16300291 - 16304391
4101