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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_16304013_16305853_F

Intron Information:

Intron Rank:
128234
Intron Class:
major
Intron Phase:
Intron Coordinates:
16304013 - 16305853
Intron Length:
1841

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTACTCGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TCTTACTCGACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
79.3
28.7
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
73.3
0.52
1
69
36.9
Minor 5ss
32.1
-2
3
39.7
45.8
Minor BPS
58.7
0.27
1.8
71.92
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019062
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035763
16303963 - 16307830
3868