About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_16451773_16454058_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16451773 - 16454058
Intron Length:
2286

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTAAA
5'SS Class:
major
3'SS Sequence:
ATTTTGCATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
ATTGCTTTCATT
Flanking Amino Acid:
FRGATELYRTGKKSHLRKTT
Intron Amino Acid Position:
258

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.69
1
77.8
31.4
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
73.6
0.53
0.9
71.5
39.2
Minor 5ss
41.2
-1
2.5
51
45.5
Minor BPS
58.3
0.34
1.8
77.48
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014649
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015275
16451546 - 16524729
73184