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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_16463044_16465267_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16463044 - 16465267
Intron Length:
2224

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATGTTAC
5'SS Class:
major
3'SS Sequence:
TCTTTTACTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
TCACCTTTAAAA
Flanking Amino Acid:
HGHVSYLDFAKFGVKKKPIY
Intron Amino Acid Position:
126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
73.9
30.9
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
83.3
0.75
0.7
82.4
27.9
Minor 5ss
48.3
-0.1
2.4
60.9
38.3
Minor BPS
63
0.41
1.4
67
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014649
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015275
16451546 - 16524729
73184