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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_16465354_16471508_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16465354 - 16471508
Intron Length:
6155

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATGC
5'SS Class:
strong_major
3'SS Sequence:
TCTACTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAA
U12 Branch Point Sequence:
TCTACTTTTACA
Flanking Amino Acid:
NNPVMSLQDQVRFVKNVTSW
Intron Amino Acid Position:
98

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
75.9
34.8
Major BPS
74.4
0.61
0.9
63.6
35.5
Major PPT
85.4
0.8
0.8
79.5
32.4
Minor 5ss
38.3
-1.3
3.1
50.9
45.7
Minor BPS
62.5
0.39
1.7
71.81
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014649
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015275
16451546 - 16524729
73184