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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_1647699_1648122_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1647699 - 1648122
Intron Length:
424

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGA|GTAAGCATT
5'SS Class:
major
3'SS Sequence:
TTCACCTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTTTTCACCT
Flanking Amino Acid:
LGLKDGIILCELINKLQPGS
Intron Amino Acid Position:
60

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.1
75.5
40.6
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
74.2
0.54
0.8
65.6
35.9
Minor 5ss
46.6
-0.3
2.9
63.3
42
Minor BPS
60.7
0.41
1.8
83.3
38.2

Associated Gene:

Gene:
CNN3
Ensembl Gene ID:
ENSAPLG00000011050
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018310
1643294 - 1698884
55591
ENSAPLT00000011508
1642536 - 1664935
22400
ENSAPLT00000042866
1643294 - 1664027
20734