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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_16535073_16536705_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16535073 - 16536705
Intron Length:
1633

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGCGGG
5'SS Class:
major
3'SS Sequence:
TATTGATTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TAATACTAAAAT
Flanking Amino Acid:
WLGLLLGLQAVYVYGAQLSS
Intron Amino Acid Position:
19

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1.1
54.4
44.7
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
80.7
0.69
0.9
74
40.3
Minor 5ss
30.8
-2.2
3.3
38.2
46.7
Minor BPS
52.5
0.16
1.9
72.86
43

Associated Gene:

Gene:
SELENOF
Ensembl Gene ID:
ENSAPLG00000024886
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045754
16535019 - 16536915
1897