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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_16572183_16573146_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16572183 - 16573146
Intron Length:
964

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
AATTATTAGATT
Flanking Amino Acid:
SSELSLLADEVITVYSIPGM
Intron Amino Acid Position:
332

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99.2
1.16
0.6
97
9.5
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
85.4
0.8
0.7
84.5
30.4
Minor 5ss
46.1
-0.4
2.8
66.9
44.4
Minor BPS
48.1
-0
1.8
66.52
38.5

Associated Gene:

Gene:
SH3GLB1
Ensembl Gene ID:
ENSAPLG00000014317
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018748
16572075 - 16589774
17700
ENSAPLT00000014946
16571902 - 16589774
17873
ENSAPLT00000033020
16572075 - 16587747
15673
ENSAPLT00000019225
16572075 - 16589774
17700