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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_16576867_16577389_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16576867 - 16577389
Intron Length:
523

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TGCTGTGTTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTGAA
U12 Branch Point Sequence:
AGAACTTGAATT
Flanking Amino Acid:
LLLEGISSTHAHHLRCLNDF
Intron Amino Acid Position:
221

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
78.8
29.6
Major BPS
65.8
0.39
1
57.3
39.4
Major PPT
70.8
0.47
1
64.4
41.6
Minor 5ss
33
-1.9
2.7
39.4
38.9
Minor BPS
53.9
0.2
1.4
66.04
38.3

Associated Gene:

Gene:
SH3GLB1
Ensembl Gene ID:
ENSAPLG00000014317
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033020
16572075 - 16587747
15673
ENSAPLT00000019225
16572075 - 16589774
17700
ENSAPLT00000018748
16572075 - 16589774
17700
ENSAPLT00000014946
16571902 - 16589774
17873