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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_16577480_16581799_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16577480 - 16581799
Intron Length:
4320

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAATGTC
5'SS Class:
major
3'SS Sequence:
TACTTGCTTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTAAT
U12 Branch Point Sequence:
AAGTACCTAATA
Flanking Amino Acid:
TSQPEENNIMSEQEVRITQS
Intron Amino Acid Position:
204

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
74.7
33.7
Major BPS
73.1
0.57
1
71.9
31.3
Major PPT
76.3
0.59
0.9
73.8
36.6
Minor 5ss
36.7
-1.5
3.4
48.8
42.8
Minor BPS
49.8
-0
1.8
61.04
38.6

Associated Gene:

Gene:
SH3GLB1
Ensembl Gene ID:
ENSAPLG00000014317
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018748
16572075 - 16589774
17700