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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_16580370_16581799_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
16580370 - 16581799
Intron Length:
1430

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAATGTC
5'SS Class:
major
3'SS Sequence:
TAATGCTGACTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
GTTTTTTTATTT
Flanking Amino Acid:
TSQPEENNIMIWAEEVTKSE
Intron Amino Acid Position:
204

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
74.7
33.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
55.4
0.12
1.1
48.5
44.4
Minor 5ss
36.7
-1.5
3.4
48.8
42.8
Minor BPS
64.6
0.54
1.5
79.7
37

Associated Gene:

Gene:
SH3GLB1
Ensembl Gene ID:
ENSAPLG00000014317
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019225
16572075 - 16589774
17700