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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_16584091_16584463_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16584091 - 16584463
Intron Length:
373

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTTGA
5'SS Class:
major
3'SS Sequence:
AACTTGCTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
ATCTCATGAACT
Flanking Amino Acid:
FIEGDYKTITKERKLLQNKR
Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1.1
68.3
39.3
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
74.5
0.55
0.9
69.9
40.6
Minor 5ss
42.5
-0.8
2.8
59.1
45.4
Minor BPS
63.6
0.5
1.8
80.91
40.2

Associated Gene:

Gene:
SH3GLB1
Ensembl Gene ID:
ENSAPLG00000014317
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019225
16572075 - 16589774
17700
ENSAPLT00000018748
16572075 - 16589774
17700
ENSAPLT00000014946
16571902 - 16589774
17873
ENSAPLT00000033020
16572075 - 16587747
15673