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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_16584598_16585285_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16584598 - 16585285
Intron Length:
688

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCATTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTCTCATTTACA
Flanking Amino Acid:
GNEFGPGTAYGNALIKCGET
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.8
79.4
28.8
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
86
0.81
0.7
80.2
30.7
Minor 5ss
32.1
-2
3.1
36.8
41.9
Minor BPS
62.6
0.39
1.9
76.8
39.9

Associated Gene:

Gene:
SH3GLB1
Ensembl Gene ID:
ENSAPLG00000014317
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033020
16572075 - 16587747
15673
ENSAPLT00000019225
16572075 - 16589774
17700
ENSAPLT00000018748
16572075 - 16589774
17700
ENSAPLT00000014946
16571902 - 16589774
17873