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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_16585415_16586184_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16585415 - 16586184
Intron Length:
770

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGGAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAA
U12 Branch Point Sequence:
ATTTTAAGAACT
Flanking Amino Acid:
QTEVLLQPNPNARIEEFVYE
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
76.2
39.3
Major BPS
78.5
0.71
0.9
69.7
37.1
Major PPT
92.2
0.95
0.5
92.5
17.5
Minor 5ss
35.7
-1.6
3.3
49
41.4
Minor BPS
49.9
0.08
2
77.67
37.8

Associated Gene:

Gene:
SH3GLB1
Ensembl Gene ID:
ENSAPLG00000014317
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014946
16571902 - 16589774
17873
ENSAPLT00000033020
16572075 - 16587747
15673
ENSAPLT00000019225
16572075 - 16589774
17700
ENSAPLT00000018748
16572075 - 16589774
17700