Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_16586327_16587188_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

16586327 - 16587188

Intron Length:

862

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTACAAACT

5'SS Class:

major

3'SS Sequence:

TAACTAACCATAG|T

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTTTCAA

U12 Branch Point Sequence:

TATGAATTAACT

Flanking Amino Acid:

FLLSQRTGIEFTEEKLGQAE

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.57

71.6

38.1

Major BPS

90.8

1.01

0.7

91.9

19.6

Major PPT

59.2

0.21

0.9

52.1

36.4

Minor 5ss

34.4

-1.8

3.3

50.3

45.7

Minor BPS

59.2

0.37

1.9

79.78

41.5

Associated Gene:

Gene:

SH3GLB1

Ensembl Gene ID:

ENSAPLG00000014317

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033020

16572075 - 16587747

15673