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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_16586327_16589702_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
16586327 - 16589702
Intron Length:
3376

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGCCG
5'SS Class:
major
3'SS Sequence:
TAACTAACCATAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TATGAATTAACT
Flanking Amino Acid:
AGTFLSRAVQFTEEKLGQAE
Intron Amino Acid Position:
25

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1.1
57.9
46.7
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
59.2
0.21
0.9
52.1
36.4
Minor 5ss
29.7
-2.3
3.4
38.8
46.5
Minor BPS
59.2
0.37
1.9
79.78
41.5

Associated Gene:

Gene:
SH3GLB1
Ensembl Gene ID:
ENSAPLG00000014317
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019225
16572075 - 16589774
17700
ENSAPLT00000018748
16572075 - 16589774
17700
ENSAPLT00000014946
16571902 - 16589774
17873