About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_16596268_16597213_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16596268 - 16597213
Intron Length:
946

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTAG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTCCCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
GTATATTAATTT
Flanking Amino Acid:
APGDDFDIGKAVQYIIKSSE
Intron Amino Acid Position:
257

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
80.1
30.7
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
82.9
0.74
0.7
77.2
31.5
Minor 5ss
34.1
-1.8
2.8
39.6
46.4
Minor BPS
44.8
-0.3
2
62.15
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021297
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044570
16595726 - 16599250
3525